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James Morris, Ph.D.
Assistant Professor of Biology

M.D., Ph.D., Harvard University

contact information
(781) 736-3119

I have broad interests in genetics and epigenetics, organismal and evolutionary biology, and medicine and have been fortunate over the years to be able to teach, do research, write, and work in these various fields. At Brandeis, I am pursuing these diverse interests by focusing on teaching, writing, research, and undergraduate science education.

Teaching

At Brandeis, I teach several courses. In the fall, I teach Biology 60b Evolutionary Biology. Evolution is the unifying theory of biology. The geneticist Theodosius Dobzhansky said famously, "Nothing in biology makes sense except in the light of evolution." Of all of the biological disciplines, evolutionary biology is the most sweeping because it aims to explain almost everything about the living world - the diversity of life, the similarities among organisms, and the basic characteristics of all living things.

In the spring, I teach Biology 43b Anatomy. Here, I take a broad view of anatomy, emphasizing embryology and development, comparative anatomy, and the relationship between structure and function. We take time in this class to do many dissections, as the only way to really learn anatomy well is to follow vessels, look at organs, and remove connective tissue. I also use clinical cases throughout the course as a way to integrate various organ systems.

I am particularly excited about a new course, Biology 155a Project Laboratory in Genetics and Genomics. This unique course gives undergraduates a chance to do an original, independent, laboratory-based research project in the context of a semester-long course. This year we are focusing on research in bacterial genetics, but we envision designing additional ones in such areas as Drosophila genetics, microbiology, and behavior.

I also teach a University Seminar called "Darwin's On the Origin of Species" which gives students the opportunity to read deliberately and closely one of the centrally important works in modern Western thought. I am also working on a new BISC course that will examine the biology, sociology, and language of the deaf.

Research

My research focuses on an unusual way that genes are turned on and off. I am pursuing this work in the context of a project laboratory course for undergraduates and independent summer and semester research for undergraduate students.

Diploid organisms have two copies of each chromosome and gene. Interestingly, the presence of such homologues can exert unexpected and powerful effects on gene expression. In mammals, the presence of two X chromosomes leads to condensation and silencing of an entire X chromosome by X-inactivation. In plants, interactions between certain alleles can lead to heritable changes in gene expression via paramutation. In fungi, duplicated DNA sequences are not tolerated and undergo sequence changes. These processes and others, including genomic imprinting and transgene silencing, are often referred to as epigenetic, a remarkable class of regulatory processes that together speak to the profound influence of gene structure, chromatin packaging, and interactions in the nucleus on gene expression. While mechanistically distinct, these processes share a common feature: in each case, the presence of homologous nucleic acids leads to changes in gene expression.

I am interested in epigenetic phenomena and specifically the role of homology in the control of chromosome structure and gene expression. The fruit fly Drosophila melanogaster provides a useful window on these processes. Drosophila shows pairing of homologous chromosomes in somatic cells. Interestingly, the expression of some genes is sensitive to pairing, in that they show different expression patterns in the paired and unpaired states. Such pairing sensitivity in gene expression is an example of a transvection effect. Transvection has been documented at many loci in Drosophila, and related processes have been described in many organisms, including fungi, plants, and mammals.

Writing

I also enjoy writing. I am participating in the writing of an introductory biology college-level textbook. This project has given me the chance to write about biology broadly, while considering how to make the material engaging and interesting to a wide range of students.

Teaching awards

  • Letter of Commendation for Distinguished Teaching, Harvard Extension School, 2006.
  • Letter of Commendation for Distinguished Teaching, Harvard Extension School, 2005.
  • Certificate of Distinction in Teaching, Biological Sciences 50, Harvard College, 2003-2004.
  • Certificate of Distinction in Teaching, Biological Sciences 57, Harvard College, 2003-2004.
  • Certificate of Distinction in Teaching, Biological Sciences 57, Harvard College, 2002-2003.

Selected Publications

J. R. Morris, T. Jehn, E. Pantages, C. Vaughan, T. Torello, M. Buchelli, D. Lohman, and R. Lue. 2005. A Student's Guide to Writing in the Sciences. Harvard University.

J. R. Morris, D. A. Petrov, A. M. Lee, and C.-t. Wu. 2004. Enhancer choice in cis and in trans in Drosophila melanogaster: role of the promoter. Genetics 167: 1739-1747. [abstract]

C.-t. Wu and J. R. Morris. 2001. Genes, genetics, and epigenetics: a correspondence. Science 293: 1103-1105. [abstract] [.PDF version]

C. D. Kaplan, J. R. Morris, C.-t. Wu, and F. Winston. 2000. Spt5 and Spt6 are associated with active transcription and have characteristics of general elongation factors in Drosophila melanogaster. Genes & Dev. 14: 2623-2634. [abstract]

C.-t. Wu and J. R. Morris. 1999. Transvection and other homology effects. Curr. Opin. Genet. Dev. 9: 237-246. [abstract]

J. R. Morris, P. K. Geyer, and C.-t. Wu. 1999. Core promoter elements can regulate transcription on a separate chromosome in trans. Genes & Dev. 13: 253-258. [abstract]

J. R. Morris, J.-l Chen, S. T. Filandrinos, R. C. Dunn, R. Fisk, P. K. Geyer, and C.T. Wu. 1999. An analysis of transvection at the yellow locus of Drosophila melanogaster. Genetics 151: 633-651. [abstract]

J. R. Morris, J.-l. Chen, P. K. Geyer, and C.-t. Wu. 1998. Two modes of transvection: enhancer action in trans and bypass of a chromatin insulator in cis. Proc. Natl. Acad. Sci. USA. 95: 10740-10745. [abstract]

 

 


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