2008
Coïc E, Feldman T, Landman AS, Haber JE. (2008) Mechanisms of Rad52-independent spontaneous and UV-induced mitotic recombination in Saccharomyces cerevisiae. Genetics. 2008 May 5. [Epub ahead of print]
Lazzaro F, Sapountzi V, Granata M, Pellicioli A, Vaze M, Haber JE, Plevani P, Lydall D, Muzi-Falconi M. (2008) Histone methyltransferase Dot1 and Rad9 inhibit single-stranded DNA accumulation at DSBs and uncapped telomeres. EMBO J. 2008 Apr 17. [Epub ahead of print]
Kim HS, Vijayakumar S, Reger M, Harrison JC, Haber JE, Weil C, Petrini JH. (2008) Functional interactions between Sae2 and the Mre11 complex.
Genetics. 178(2):711-23.
Haber JE. (2008) Alternative endings. Proc Natl Acad Sci U S A. 105(2):405-6.
2007
De Koning L, Corpet A, Haber JE, Almouzni G. (2007) Histone chaperones: an escort network regulating histone traffic. Nat Struct Mol Biol. 14(11):997-1007.
Morrison AJ, Kim JA, Person MD, Highland J, Xiao J, Wehr TS, Hensley S, Bao Y, Shen J, Collins SR, Weissman JS, Delrow J, Krogan NJ, Haber JE, Shen X. (2007) Mec1/Tel1 Phosphorylation of the INO80 Chromatin Remodeling Complex Influences DNA Damage Checkpoint Responses. Cell. 130(3):499-511.
Lydeard JR, Jain S, Yamaguchi M, Haber JE. (2007) Break-induced replication and telomerase-independent telomere maintenance require Pol32. Nature. 448(7155):820-3.
Flott S, Alabert C, Toh GW, Toth R, Sugawara N, Campbell DG, Haber JE, Pasero P, Rouse J. (2007) Mol Cell Biol. Jul 16
Kim JA, Kruhlak M, Dotiwala F, Nussenzweig A, Haber JE. (2007) J Cell Biol. 178(2):209-18.
Dotiwala F, Haase J, Arbel-Eden A, Bloom K, Haber JE. (2007) The yeast DNA damage checkpoint proteins control a cytoplasmic response to DNA damage. Proc Natl Acad Sci U S A. 104(27):11358-63.
Cortes-Ledesma F, de Piccoli G, Haber JE, Aragon L, Aguilera A. (2007) SMC proteins, new players in the maintenance of genomic stability. Cell Cycle. 6(8):914-8.
Torres-Rosell J, De Piccoli G, Cordon-Preciado V, Farmer S, Jarmuz A, Machin
F, Pasero P, Lisby M, Haber JE, Aragon L. Anaphase onset before complete DNA replication with intact checkpoint responses. (2007) Science. 315(5817):1411-5.
2006
Ira G, Satory D, Haber JE. (2006) Conservative inheritance of newly synthesized DNA in double-strand break-induced gene conversion. Mol Cell Biol. 26(24):9424-9.
De Piccoli G, Cortes-Ledesma F, Ira G, Torres-Rosell J, Uhle S, Farmer S, Hwang JY, Machin F, Ceschia A, McAleenan A, Cordon-Preciado V, Clemente-Blanco A, Vilella-Mitjana F, Ullal P, Jarmuz A, Leitao B, Bressan D, Dotiwala F, Papusha A,
Zhao X, Myung K, Haber JE, Aguilera A, Aragon L. (2006) Smc5-Smc6 mediate DNA double-strand-break repair by promoting sister-chromatid recombination. Nat Cell Biol. 8(9):1032-4.
Coic E, Sun K, Wu C, Haber JE. (2006) Cell cycle-dependent regulation of Saccharomyces cerevisiae donor preference during mating-type switching by SBF (Swi4/Swi6) and Fkh1. Mol Cell Biol. 26(14):5470-80
Sugawara N, Haber JE. (2006) Repair of DNA double strand breaks: in vivo biochemistry. Methods Enzymol. 408:416-29.
Valencia-Burton M, Oki M, Johnson J, Seier TA, Kamakaka R, Haber JE. (2006) Different mating-type-regulated genes affect the DNA repair defects of Saccharomyces RAD51, RAD52 and RAD55 mutants. Genetics. 174(1):41-55.
Coic E, Richard GF, Haber JE. (2006) Saccharomyces cerevisiae donor preference during mating-type switching is dependent on chromosome architecture and organization. Genetics. 173(3):1197-206.
Eachern MJ, Haber JE. (2006) Break-induced replication and recombinational telomere elongation in yeast. Annu Rev Biochem. 75:111-35
Haber JE, Debatisse M. (2006) Gene amplification: yeast takes a turn. Cell. 125(7):1237-40.
Haber JE. Transpositions and translocations induced by site-specific double-strand breaks in budding yeast. (2006) DNA Repair (Amst). 2006 Sep 8;5(9-10):998-1009.
Harrison JC, Haber JE. (2006) Surviving the breakup: the DNA damage checkpoint. Annu Rev Genet. 40:209-35
Keogh MC, Kim JA, Downey M, Fillingham J, Chowdhury D, Harrison JC, Onishi M, Datta N, Galicia S, Emili A, Lieberman J, Shen X, Buratowski S, Haber JE,
Durocher D, Greenblatt JF, Krogan NJ. (2006) A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery. Nature. 439(7075):497-501.
Corda Y, Lee SE, Guillot S, Walther A, Sollier J, Arbel-Eden A, Haber JE, Geli V. (2005) Inactivation of Ku-mediated end joining suppresses mec1Delta lethality by depleting the ribonucleotide reductase inhibitor Sml1 through a pathway controlled by Tel1 kinase and the Mre11 complex. Mol Cell Biol. 25(23):10652-64.
2005
Clatworthy, AE, Valencia-Burton, MA, Haber, JE, and Oettinger, MA. (2005). The MRE11-RAD50-XRS2 complex, in addition to other non-homologous end-joining factors, is required for V(D)J joining in yeast. J Biol Chem 280, 20247-52.
Liberi, G, Maffioletti, G, Lucca, C, Chiolo, I, Baryshnikova, A, Cotta-Ramusino, C, Lopes, M, Pellicioli, A, Haber, JE, and Foiani, M. (2005). Rad51-dependent DNA structures accumulate at damaged replication forks in sgs1 mutants defective in the yeast ortholog of BLM RecQ helicase. Genes Dev 19, 339-50.
Malkova, A, Naylor, ML, Yamaguchi, M, Ira, G, and Haber, JE. (2005). RAD51-dependent break-induced replication differs in kinetics and checkpoint responses from RAD51-mediated gene conversion. Mol Cell Biol 25, 933-44.
2004
Unal, E, Arbel-Eden, A, Sattler, U, Shroff, R, Lichten, M, Haber, JE, and Koshland, D. (2004). DNA damage response pathway uses histone modification to assemble a double-strand break-specific cohesin domain. Mol Cell 16, 991-1002.
Morrison, AJ, Highland, J, Krogan, NJ, Arbel-Eden, A, Greenblatt, JF, Haber, JE, and Shen, X. (2004). INO80 and gamma-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair. Cell 119, 767-75.
Kaye, JA, Melo, JA, Cheung, SK, Vaze, MB, Haber, JE, and Toczyski, DP. (2004). DNA breaks promote genomic instability by impeding proper chromosome segregation. Curr Biol 14, 2096-106.
Haber, JE. (2004). Telomeres thrown for a loop. Mol Cell 16, 502-3.
Haber JE, Ira G, Malkova A, Sugawara N (2004) Repairing a double-strand chromosome break by homologous recombination: revisiting Robin Holliday's model. Philos Trans R Soc Lond B Biol Sci. 359(1441):79-86.
Ira, G, Pellicioli, A, Balijja, A, Wang, X, Fiorani, S, Carotenuto, W, Liberi, G, Bressan, D, Wan, L, Hollingsworth, NM, Haber, JE, and Foiani, M. (2004). DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1. Nature 431, 1011-7.
Shroff, R, Arbel-Eden, A, Pilch, D, Ira, G, Bonner, WM, Petrini, JH, Haber, JE, and Lichten, M. (2004). Distribution and dynamics of chromatin modification induced by a defined DNA double-strand break. Curr Biol 14, 1703-11.
Malkova, A, Swanson, J, German, M, McCusker, JH, Housworth, EA, Stahl, FW, and Haber, JE. (2004). Gene conversion and crossing over along the 405-kb left arm of Saccharomyces cerevisiae chromosome VII. Genetics 168, 49-63.
Wang, X, Ira, G, Tercero, JA, Holmes, AM, Diffley, JF, and Haber, JE. (2004). Role of DNA replication proteins in double-strand break-induced recombination in Saccharomyces cerevisiae. Mol Cell Biol 24, 6891-9.
Sugawara, N, Goldfarb, T, Studamire, B, Alani, E, and Haber, JE. (2004). Heteroduplex rejection during single-strand annealing requires Sgs1 helicase and mismatch repair proteins Msh2 and Msh6 but not Pms1. Proc Natl Acad Sci U S A 101, 9315-20.
Miyazaki T, Bressan DA, Shinohara M, Haber JE, Shinohara A. (2004) In vivo assembly and disassembly of Rad51 and Rad52 complexes during double-strand break repair.
EMBO J. 23(4):939-49.
Bressan DA, Vazquez J, Haber JE. (2004) Mating type-dependent constraints on the mobility of the left arm of yeast chromosome III.
J Cell Biol. 164(3):361-71.
Wang X, Haber JE. (2004) Role of Saccharomyces single-stranded DNA-binding protein RPA in the strand invasion step of double-strand break repair. PLoS Biol. 2(1):E21
Yu J, Marshall K, Yamaguchi M, Haber JE, Weil CF. (2004) Microhomology-dependent end joining and repair of transposon-induced DNA hairpins by host factors in Saccharomyces cerevisiae. Mol Cell Biol. 24(3):1351-64.
2003
Haber JE (2003) Aging: the sins of the parents. Curr Biol. Oct 28;13(21):R843-5.
Ira G, Malkova A, Liberi G, Foiani M, Haber JE (2003) Srs2 and Sgs1-Top3 suppress crossovers during double-strand break repair in yeast. Cell. 115(4):401-11.
Lee SE, Pellicioli A, Vaze MB, Sugawara N, Malkova A, Foiani M, Haber JE. (2003)Yeast Rad52 and Rad51 recombination proteins define a second pathway DNA damage assessment in response to a single double-strand break. Mol Cell Biol. 23(23):8913-23.
Ma JL, Kim EM, Haber JE, Lee SE (2003) Yeast Mre11 and Rad1 proteins define a Ku-independent mechanism to repair double-strand breaks lacking overlapping end sequences. Mol Cell Biol. 23(23):8820-8.
Clatworthy AE, Valencia MA, Haber JE, Oettinger MA. (2003) V(D)J recombination and RAG-mediated transposition in yeast. Mol Cell. 12(2):489-99.
Sugawara N, Wang X, Haber JE. (2003). In vivo roles of Rad52, Rad54, and Rad55 proteins in Rad51-mediated recombination. Mol Cell. 12(1):209-19.
Leroy C, Lee SE, Vaze MB, Ochsenbien F, Guerois R, Haber JE, Marsolier-Kergoat MC. (2003). PP2C phosphatases Ptc2 and Ptc3 are required for DNA checkpoint inactivation after a double-strand break. Mol Cell. 11(3):827-35., Mol Cell. 11(40):1119.
2002
Haber JE. (2002). Switching of Saccharomyces cerevisiae Mating-Type Genes. Mobile DNA II. N. Craig. ASM Press, Washington DC, pp. 927-952.
Lee SE, Bressan DA, Petrini JH, Haber JE. (2002). Complementation between N-terminal Saccharomyces cerevisiae mre11 alleles in DNA repair and telomere length maintenance. DNA Repair (Amst). 1(1):27-40.
Vaze M, Pellicioli A, Lee S, Ira G, Liberi G, Arbel-Eden A, Foiani M, Haber J. (2002). Recovery from checkpoint-mediated arrest after repair of a double-strand break requires Srs2 helicase. Mol Cell. 10(2):373.
Ira G, Haber JE. (2002). Characterization of RAD51-independent break-induced replication that acts preferentially with short homologous sequences. Mol Cell Biol. 22(18):6384-92.
Sun K, Coic E, Zhou Z, Durrens P, Haber JE. (2002). Saccharomyces forkhead protein Fkh1 regulates donor preference during mating-type switching through the recombination enhancer. 16(16):2085-96
2001
Valencia M, Bentele M, Vaze MB, Herrmann G, Kraus E, Lee SE, Schar P, Haber JE. (2001). NEJ1 controls non-homologous end joining in Saccharomyces cerevisiae. Nature. 414(6864):666-669.
Haber JE. (2001). Uses and abuses of HO endonuclease. Methods Enzymol. 350:141-64.
Haber JE, Heyer WD. (2001). The Fuss about Mus81. Cell. 107(5):551-4.
Haber JE. Hypermutation: give us a break. (2001). Nat Immunol. 2(10):902-3.
Lee SE, Pellicioli A, Malkova A, Foiani M, Haber JE. (2001). The Saccharomyces recombination protein Tid1p is required for adaptation from G2/M arrest induced by a double-strand break. Curr Biol. 11(13):1053-7.
Kraus E, Leung WY, Haber JE. (2001). Break-induced replication: a review and an example in budding yeast. Proc Natl Acad Sci U S A. 98(15):8255-62.
Zhou Z, Sun K, Lipstein EA, Haber JE. (2001). A Saccharomyces servazzii clone homologous to Saccharomyces cerevisiae chromosome III spanning KAR4, ARS 304 and SPB1 lacks the recombination enhancer but contains an unknown ORF. Yeast. 18(9):789-95.
Paques F, Richard GF, Haber JE. (2001). Expansions and contractions in 36-bp minisatellites by gene conversion in yeast. Genetics. 158(1):155-66.
Malkova A, Signon L, Schaefer CB, Naylor ML, Theis JF, Newlon CS, Haber JE. (2001). RAD51-independent break-induced replication to repair a broken chromosome depends on a distant enhancer site. Genes Dev. 15(9):1055-60.
Pellicioli A, Lee SE, Lucca C, Foiani M, Haber JE. (2001). Regulation of saccharomyces Rad53 checkpoint kinase during adaptation from DNA damage-induced G2/M arrest. Mol Cell. 7(2):293-300.
Signon L, Malkova A, Naylor ML, Klein H, Haber JE. (2001). Genetic requirements for RAD51- and RAD54-independent break-induced replication repair of a chromosomal double-strand break. Mol Cell. Biol. 21(6):2048-56.
2000
Haber, J. E. (2000). Lucky breaks: analysis of recombination in Saccharomyces. Mutat Res. 451(1-2): 53-69.
Haber, J. E. (2000). Partners and pathways repairing a double-strand break. Trends Genet. 16(6): 259-64.
Haber, J. E. (2000). Recombination: a frank view of exchanges and vice versa. Curr Opin Cell Biol. 12(3): 286-92.
Lee SE, Pellicioli A, Demeter J, Vaze MP, Gasch AP, Malkova A, Brown PO, Botstein D, Stearns T, Foiani M, Haber JE (2000) Arrest, adaptation, and recovery following a chromosome double-strand break in Saccharomyces cerevisiae Cold Spring Harb Symp Quant Biol. ;65:303-14
Malkova A, Klein F, Leung WY, Haber JE. (2000). HO endonuclease-induced recombination in yeast meiosis resembles Spo11-induced events. Proc. Natl. Acad. Sci. U S A. Dec 19;97(26):14500-14505.
Lee SE, Pellicioli A, Demeter J, Vaze MP, Gasch AP, Malkova A, Brown PO, Botstein D, Stearns T, Foiani M, Haber JE. (2000). Arrest, adaptation, and recovery following a chromosome double-strand break in Saccharomyces cerevisiae.
Cold Spring Harb Symp Quant Biol. 65:303-14.
Demeter, J., Lee, S. E., Haber, J. E. and Stearns, T. (2000). The DNA damage checkpoint signal in budding yeast is nuclear limited. Mol Cell. 6(2): 487-92.
Evans, E., Sugawara, N., Haber, J. E. and Alani, E. (2000). The Saccharomyces cerevisiae Msh2 mismatch repair protein localizes to recombination intermediates in vivo. Mol Cell. 5(5): 789-99.
Richard, G. F., Goellner, G. M., McMurray, C. T. and Haber, J. E. (2000). Recombination-induced CAG trinucleotide repeat expansions in yeast involve the MRE11-RAD50-XRS2 complex. Embo J. 19(10): 2381-90.
Sugawara, N., Ira, G. and Haber, J. E. (2000). DNA length dependence of the single-strand annealing pathway and the role of Saccharomyces cerevisiae RAD59 in double-strand break repair. Mol Cell Biol. 20(14): 5300-9.
1999
Colaiacovo, M. P., Paques, F. and Haber, J. E. (1999). Removal of one nonhomologous DNA end during gene conversion by a RAD1- and MSH2-independent pathway. Genetics. 151(4): 1409-23.
Haber, J. E. (1999). DNA recombination: the replication connection. Trends Biochem Sci. 24(7): 271-5.
Haber, J. E. (1999). DNA repair. Gatekeepers of recombination. Nature. 398(6729): 665, 667.
Haber, J. E. (1999). Sir-Ku-itous routes to make ends meet. Cell. 97(7): 829-32.
Holmes, A. and Haber, J. E. (1999). Physical monitoring of HO-induced homologous recombination. Methods Mol Biol. 113: 403-15.
Holmes, A. M. and Haber, J. E. (1999). Double-strand break repair in yeast requires both leading and lagging strand DNA polymerases. Cell. 96(3): 415-24.
Le, S., Moore, J. K., Haber, J. E. and Greider, C. W. (1999). RAD50 and RAD51 define two pathways that collaborate to maintain telomeres in the absence of telomerase. Genetics. 152(1): 143-52.
Lee, S. E., Paques, F., Sylvan, J. and Haber, J. E. (1999). Role of yeast SIR genes and mating type in directing DNA double-strand breaks to homologous and non-homologous repair paths. Curr Biol. 9(14): 767-70.
Paques, F. and Haber, J. E. (1999). Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol Mol Biol Rev. 63(2): 349-404
Richard, G. F., Dujon, B. and Haber, J. E. (1999). Double-strand break repair can lead to high frequencies of deletions within short CAG/CTG trinucleotide repeats. Mol Gen Genet. 261(4-5): 871-82.
Studamire, B., Price, G., Sugawara, N., Haber, J. E. and Alani, E. (1999). Separation-of-function mutations in Saccharomyces cerevisiae MSH2 that confer mismatch repair defects but do not affect nonhomologous-tail removal during recombination. Mol Cell Biol. 19(11): 7558-67.
1998
Bosco, G. and Haber, J. E. (1998). Chromosome break-induced DNA replication leads to nonreciprocal translocations and telomere capture. Genetics. 150(3): 1037-47.
Haber, J. E. (1998). Meiosis. Searching for a partner. Science. 279(5352): 823-4.
Haber, J. E. (1998). The many interfaces of Mre11. Cell. 95(5): 583-6.
Haber, J. E. (1998). A locus control region regulates yeast recombination. Trends Genet. 14(8): 317-21.
Haber, J. E. (1998). Meiosis: Avoiding inappropriate relationships. Curr Biol. 8(23): R832-5.
Haber, J. E. (1998). Mating-type gene switching in Saccharomyces cerevisiae. Annu Rev Genet. 32: 561-99.
Haber, J. E. and Louis, E. J. (1998). Minisatellite origins in yeast and humans. Genomics. 48(1): 132-5.
Lee, S. E., Moore, J. K., Holmes, A., Umezu, K., Kolodner, R. D. and Haber, J. E. (1998). Saccharomyces Ku70, mre11/rad50 and RPA proteins regulate adaptation to G2/M arrest after DNA damage. Cell. 94(3): 399-409.
Nugent, C. I., Bosco, G., Ross, L. O., Evans, S. K., Salinger, A. P., Moore, J. K., Haber, J. E. and Lundblad, V. (1998). Telomere maintenance is dependent on activities required for end repair of double-strand breaks. Curr Biol. 8(11): 657-60.
Paques, F., Leung, W. Y. and Haber, J. E. (1998). Expansions and contractions in a tandem repeat induced by double-strand break repair. Mol Cell Biol. 18(4): 2045-54.
Umezu, K., Sugawara, N., Chen, C., Haber, J. E. and Kolodner, R. D. (1998). Genetic analysis of yeast RPA1 reveals its multiple functions in DNA metabolism. Genetics. 148(3): 989-1005.
Wu, C., Weiss, K., Yang, C., Harris, M. A., Tye, B. K., Newlon, C. S., Simpson, R. T. and Haber, J. E. (1998). Mcm1 regulates donor preference controlled by the recombination enhancer in Saccharomyces mating-type switching. Genes Dev. 12(11): 1726-37.
