Recent Haber Lab Publications
This link may be used to view a list of recent publications from PubMed.


Li, Yilong, et al. "Patterns of Somatic Structural Variation in Human Cancer Genomes." Nature, vol. 578, no. 7793, 2020, pp. 112"21. PubMed, doi:10.1038/s41586-019-1913-9.
Rheinbay, Esther, et al. "Analyses of Non-Coding Somatic Drivers in 2,658 Cancer Whole Genomes." Nature, vol. 578, no. 7793, 2020, pp. 102"11. PubMed, doi:10.1038/s41586-020-1965-x.
Waterman, David P., et al. "Checkpoint Responses to DNA Double-Strand Breaks." Annual Review of Biochemistry, Mar. 2020. PubMed, doi:10.1146/annurev-biochem-011520-104722.


Klein, Hannah L., et al. "Guidelines for DNA Recombination and Repair Studies: Cellular Assays of DNA Repair Pathways." Microbial Cell (Graz, Austria), vol. 6, no. 1, Jan. 2019, pp. 1"64. PubMed, doi:10.15698/mic2019.01.664.
Memisoglu, Gonen, Michael C. Lanz, et al. "Mec1ATR Autophosphorylation and Ddc2ATRIP Phosphorylation Regulates DNA Damage Checkpoint Signaling." Cell Reports, vol. 28, no. 4, 23 2019, pp. 1090-1102.e3. PubMed, doi:10.1016/j.celrep.2019.06.068.
Memisoglu, Gonen, Vinay V. Eapen, et al. "PP2C Phosphatases Promote Autophagy by Dephosphorylation of the Atg1 Complex." Proceedings of the National Academy of Sciences of the United States of America, vol. 116, no. 5, 29 2019, pp. 1613"20. PubMed, doi:10.1073/pnas.1817078116.
Memisoglu, Gonen, and James E. Haber. "Dephosphorylation of the Atg1 Kinase Complex by Type 2C Protein Phosphatases." Molecular & Cellular Oncology, vol. 6, no. 3, 2019, p. 1588658. PubMed, doi:10.1080/23723556.2019.1588658.
Thon, Genevi"ve, et al. "Mating-Type Switching by Homology-Directed Recombinational Repair: A Matter of Choice." Current Genetics, vol. 65, no. 2, Apr. 2019, pp. 351"62. PubMed, doi:10.1007/s00294-018-0900-2.
Waterman, David P., et al. "Live Cell Monitoring of Double Strand Breaks in S. Cerevisiae." PLoS Genetics, vol. 15, no. 3, 2019, p. e1008001. PubMed, doi:10.1371/journal.pgen.1008001.
Wild, Philipp, et al. "Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis." Molecular Cell, vol. 75, no. 4, 22 2019, pp. 859-874.e4. PubMed, doi:10.1016/j.molcel.2019.06.022.


Botchkarev, Vladimir V., and James E. Haber. "Functions and Regulation of the Polo-like Kinase Cdc5 in the Absence and Presence of DNA Damage." Current Genetics, vol. 64, no. 1, Feb. 2018, pp. 87"96. PubMed, doi:10.1007/s00294-017-0727-2.
Dwivedi, Gajendrahar, and James E. Haber. "Assaying Mutations Associated With Gene Conversion Repair of a Double-Strand Break." Methods in Enzymology, vol. 601, 2018, pp. 145"60. PubMed, doi:10.1016/bs.mie.2017.11.029.
Gallagher, Danielle N., and James E. Haber. "Repair of a Site-Specific DNA Cleavage: Old-School Lessons for Cas9-Mediated Gene Editing." ACS Chemical Biology, vol. 13, no. 2, 16 2018, pp. 397"405. PubMed, doi:10.1021/acschembio.7b00760.
Garbacz, Marta A., et al. "Evidence That DNA Polymerase ? Contributes to Initiating Leading Strand DNA Replication in Saccharomyces Cerevisiae." Nature Communications, vol. 9, no. 1, 27 2018, p. 858. PubMed, doi:10.1038/s41467-018-03270-4.
Haber, James E. "DNA Repair: The Search for Homology." BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, vol. 40, no. 5, 2018, p. e1700229. PubMed, doi:10.1002/bies.201700229.
Lemos, Brenda R., et al. "CRISPR/Cas9 Cleavages in Budding Yeast Reveal Templated Insertions and Strand-Specific Insertion/Deletion Profiles." Proceedings of the National Academy of Sciences of the United States of America, vol. 115, no. 9, 27 2018, pp. E2040"47. PubMed, doi:10.1073/pnas.1716855115.
Maki, Takahisa, et al. "New Insights into Donor Directionality of Mating-Type Switching in Schizosaccharomyces Pombe." PLoS Genetics, vol. 14, no. 5, 2018, p. e1007424. PubMed, doi:10.1371/journal.pgen.1007424.
Roy, Kevin R., et al. "Multiplexed Precision Genome Editing with Trackable Genomic Barcodes in Yeast." Nature Biotechnology, vol. 36, no. 6, 2018, pp. 512"20. PubMed, doi:10.1038/nbt.4137.


Anand, Ranjith, et al. "Rad51-Mediated Double-Strand Break Repair and Mismatch Correction of Divergent Substrates." Nature, vol. 544, no. 7650, 20 2017, pp. 377"80. PubMed, doi:10.1038/nature22046.
Botchkarev, Vladimir V., et al. "The Budding Yeast Polo-like Kinase Localizes to Distinct Populations at Centrosomes during Mitosis." Molecular Biology of the Cell, vol. 28, no. 8, Apr. 2017, pp. 1011"20. PubMed, doi:10.1091/mbc.E16-05-0324.
Eapen, Vinay V., et al. "A Pathway of Targeted Autophagy Is Induced by DNA Damage in Budding Yeast." Proceedings of the National Academy of Sciences of the United States of America, vol. 114, no. 7, 14 2017, pp. E1158"67. PubMed, doi:10.1073/pnas.1614364114.
Mehta, Anuja, et al. "Homology Requirements and Competition between Gene Conversion and Break-Induced Replication during Double-Strand Break Repair." Molecular Cell, vol. 65, no. 3, Feb. 2017, pp. 515-526.e3. PubMed, doi:10.1016/j.molcel.2016.12.003.
Wang, Ruoxi W., et al. "Position Effects Influencing Intrachromosomal Repair of a Double-Strand Break in Budding Yeast." PloS One, vol. 12, no. 7, 2017, p. e0180994. PubMed, doi:10.1371/journal.pone.0180994.


Av?aro?lu, Bar??, et al. "Chromosome-Refolding Model of Mating-Type Switching in Yeast." Proceedings of the National Academy of Sciences of the United States of America, vol. 113, no. 45, Nov. 2016, pp. E6929"38. PubMed, doi:10.1073/pnas.1607103113.
Haber, James E. "A Life Investigating Pathways That Repair Broken Chromosomes." Annual Review of Genetics, vol. 50, Nov. 2016, pp. 1"28. PubMed, doi:10.1146/annurev-genet-120215-035043.
Haber, James E. "The Rule of Three." Nature Reviews. Molecular Cell Biology, vol. 17, no. 6, 2016, p. 333. PubMed, doi:10.1038/nrm.2016.57.
Jain, Suvi, Neal Sugawara, and James E. Haber. "Role of Double-Strand Break End-Tethering during Gene Conversion in Saccharomyces Cerevisiae." PLoS Genetics, vol. 12, no. 4, Apr. 2016, p. e1005976. PubMed, doi:10.1371/journal.pgen.1005976.
Jain, Suvi, Neal Sugawara, Anuja Mehta, et al. "Sgs1 and Mph1 Helicases Enforce the Recombination Execution Checkpoint During DNA Double-Strand Break Repair in Saccharomyces Cerevisiae." Genetics, vol. 203, no. 2, 2016, pp. 667"75. PubMed, doi:10.1534/genetics.115.184317.
Jasin, Maria, and James E. Haber. "The Democratization of Gene Editing: Insights from Site-Specific Cleavage and Double-Strand Break Repair." DNA Repair, vol. 44, 2016, pp. 6"16. PubMed, doi:10.1016/j.dnarep.2016.05.001.
Klionsky, Daniel J., et al. "Guidelines for the Use and Interpretation of Assays for Monitoring Autophagy (3rd Edition)." Autophagy, vol. 12, no. 1, 2016, pp. 1"222. PubMed, doi:10.1080/15548627.2015.1100356.
Lee, Cheng-Sheng, et al. "Chromosome Position Determines the Success of Double-Strand Break Repair." Proceedings of the National Academy of Sciences of the United States of America, vol. 113, no. 2, Jan. 2016, pp. E146-154. PubMed, doi:10.1073/pnas.1523660113.
Nakajima, Yuko, and James E. Haber. "Chromosomes at Loose Ends." Nature Cell Biology, vol. 18, no. 3, Mar. 2016, pp. 257"59. PubMed, doi:10.1038/ncb3321.
Tsabar, Michael, Julian Haase, et al. "A Cohesin-Based Partitioning Mechanism Revealed upon Transcriptional Inactivation of Centromere." PLoS Genetics, vol. 12, no. 4, Apr. 2016, p. e1006021. PubMed, doi:10.1371/journal.pgen.1006021.
Tsabar, Michael, Wade M. Hicks, et al. "Re-Establishment of Nucleosome Occupancy during Double-Strand Break Repair in Budding Yeast." DNA Repair, vol. 47, 2016, pp. 21"29. PubMed, doi:10.1016/j.dnarep.2016.09.005.