Publications
2014*
  • Plasticity of the aging brain: new directions in cognitive neuroscience. Gutchess A. Science. 2014 Oct 31;346(6209):579-82. doi: 10.1126/science.1254604.

  • A general mechanism for competitor-induced dissociation of molecular complexes. Paramanathan T, Reeves D, Friedman LJ, Kondev J, Gelles J. Nat Commun. 2014 Oct 24;5:5207. doi: 10.1038/ncomms6207.

  • The capacity of target silencing by Drosophila PIWI and piRNAs. Post C, Clark JP, Sytnikova YA, Chirn GW, Lau NC. RNA. 2014 Oct 21.

  • Tunable dynamics of microtubule-based active isotropic gels. Henkin G, DeCamp SJ, Chen DT, Sanchez T, Dogic Z. Philos Trans A Math Phys Eng Sci. 2014 Nov 28;372(2029). pii: 20140142. doi: 10.1098/rsta.2014.0142.

  • Structure, function, and plasticity of hippocampal dentate gyrus microcircuits. Jonas P, Lisman J. Front Neural Circuits. 2014 Sep 10;8:107. doi: 10.3389/fncir.2014.00107. eCollection 2014. No abstract available.

  • GMF Promotes Leading-Edge Dynamics and Collective Cell Migration In Vivo. Poukkula M, Hakala M, Pentinmikko N, Sweeney MO, Jansen S, Mattila J, Hietakangas V, Goode BL, Lappalainen P. Curr Biol. 2014 Oct 8. pii: S0960-9822(14)01130-0. doi: 10.1016/j.cub.2014.08.066.

  • Room-temperature serial crystallography using a kinetically optimized microfluidic device for protein crystallization and on-chip X-ray diffraction. Heymann M, Opthalage A, Wierman JL, Akella S, Szebenyi DM, Gruner SM, Fraden S. IUCrJ. 2014 Aug 25;1(Pt 5):349-60. doi: 10.1107/S2052252514016960. eCollection 2014 Sep 1.

  • Looking out for future scientists. Marder E. Elife. 2014 Oct 7;3. doi: 10.7554/eLife.04901.

  • Proof of dual-topology architecture of Fluc F(-) channels with monobody blockers. Stockbridge RB, Koide A, Miller C, Koide S. Nat Commun. 2014 Oct 7;5:5120. doi: 10.1038/ncomms6120.

  • Parkinsonian gait ameliorated with a moving handrail, not with a banister. Rabin E, Demin A, Pirrotta S, Chen J, Patel H, Bhambri A, Noyola E, Lackner JR, DiZio P, DiFrancisco-Donoghue J, Werner W. Arch Phys Med Rehabil. 2014 Oct 3. pii: S0003-9993(14)01120-4. doi: 10.1016/j.apmr.2014.07.427.

  • A network that performs brute-force conversion of a temporal sequence to a spatial pattern: relevance to odor recognition. Sanders H, Kolterman BE, Shusterman R, Rinberg D, Koulakov A, Lisman J. Front Comput Neurosci. 2014 Sep 17;8:108. doi: 10.3389/fncom.2014.00108. eCollection 2014.

  • A review of the global burden, novel diagnostics, therapeutics, and vaccine targets for cryptosporidium. Checkley W, White AC Jr, Jaganath D, Arrowood MJ, Chalmers RM, Chen XM, Fayer R, Griffiths JK, Guerrant RL, Hedstrom L, Huston CD, Kotloff KL, Kang G, Mead JR, Miller M, Petri WA Jr, Priest JW, Roos DS, Striepen B, Thompson RC, Ward HD, Van Voorhis WA, Xiao L, Zhu G, Houpt ER. Lancet Infect Dis. 2014 Sep 29. pii: S1473-3099(14)70772-8. doi: 10.1016/S1473-3099(14)70772-8. Review.

  • "Is it Going to Hurt?": The Impact of the Diagnostic Odyssey on Children and Their Families. Carmichael N, Tsipis J, Windmueller G, Mandel L, Estrella E. J Genet Couns. 2014 Oct 4.

  • Two-phase model of the basal ganglia: implications for discontinuous control of the motor system. Lisman J. Philos Trans R Soc Lond B Biol Sci. 2014 Nov 5;369(1655). pii: 20130489. Review.

  • Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures. Sytnikova YA, Rahman R, Chirn GW, Clark JP, Lau NC. Genome Res. 2014 Sep 29. pii: gr.178129.114.

  • Cell-type-specific repression by methyl-CpG-binding protein 2 is biased toward long genes. Sugino K, Hempel CM, Okaty BW, Arnson HA, Kato S, Dani VS, Nelson SB. J Neurosci. 2014 Sep 17;34(38):12877-83. doi: 10.1523/JNEUROSCI.2674-14.2014.

  • Structure and Mechanism of Mouse Cyclase-associated Protein (CAP1) in Regulating Actin Dynamics. Jansen S, Collins A, Golden L, Sokolova O, Goode BL. J Biol Chem. 2014 Oct 31;289(44):30732-42. doi: 10.1074/jbc.M114.601765.

  • Age differences in self-referencing: Evidence for common and distinct encoding strategies. Gutchess AH, Sokal R, Coleman JA, Gotthilf G, Grewal L, Rosa N. Brain Res. 2014 Sep 16. pii: S0006-8993(14)01108-1. doi: 10.1016/j.brainres.2014.08.033.

  • Energetic dissection of Gleevec's selectivity toward human tyrosine kinases. Agafonov RV, Wilson C, Otten R, Buosi V, Kern D. Nat Struct Mol Biol. 2014 Oct;21(10):848-53. doi: 10.1038/nsmb.2891. Epub 2014 Sep 14.

  • Structural correlates of rotavirus cell entry. Abdelhakim AH, Salgado EN, Fu X, Pasham M, Nicastro D, Kirchhausen T, Harrison SC. PLoS Pathog. 2014 Sep 11;10(9):e1004355. doi: 10.1371/journal.ppat.1004355. eCollection 2014 Sep.

  • Electrical coupling and innexin expression in the stomatogastric ganglion of the crab Cancer borealis. Shruti S, Schulz DJ, Lett KM, Marder E. J Neurophysiol. 2014 Sep 10:jn.00536.2014. doi: 10.1152/jn.00536.2014.

  • Formation of Heterobimetallic Zirconium/Cobalt Diimido Complexes via a Four-Electron Transformation. Wu B, Hernández Sánchez R, Bezpalko MW, Foxman BM, Thomas CM. Inorg Chem. 2014 Oct 6;53(19):10021-3. doi: 10.1021/ic501490e. Epub 2014 Sep 9.

  • Piwi Proteins and piRNAs Step onto the Systems Biology Stage. Clark JP, Lau NC. Adv Exp Med Biol. 2014;825:159-97. doi: 10.1007/978-1-4939-1221-6_5.

  • Anti-diabetic effects of palm fruit juice in the Nile rat (Arvicanthis niloticus). Bolsinger J, Pronczuk A, Sambanthamurthi R, Hayes KC. J Nutr Sci. 2014 Apr 30;3:e5. doi: 10.1017/jns.2014.3. eCollection 2014.

  • Hierarchical organization of chiral rafts in colloidal membranes. Sharma P, Ward A, Gibaud T, Hagan MF, Dogic Z. Nature. 2014 Sep 4;513(7516):77-80. doi: 10.1038/nature13694.

  • Influences of appearance-behaviour congruity on memory and social judgements. Cassidy BS, Gutchess AH. Memory. 2014 Sep 2:1-17.

  • Building a temperature-sensitive ion channel. Tsai MF, Miller C. Cell. 2014 Aug 28;158(5):977-9. doi: 10.1016/j.cell.2014.08.008.

  • Prion-like Nanofibrils of Small Molecules (PriSM) Selectively Inhibit Cancer Cells by Impeding Cytoskeleton Dynamics. Kuang Y, Long MJ, Zhou J, Shi J, Gao Y, Xu C, Hedstrom L, Xu B. J Biol Chem. 2014 Oct 17;289(42):29208-18. doi: 10.1074/jbc.M114.600288. Epub 2014 Aug 25.

  • Bacterial fluoride resistance, Fluc channels, and the weak acid accumulation effect. Ji C, Stockbridge RB, Miller C. J Gen Physiol. 2014 Sep;144(3):257-61. doi: 10.1085/jgp.201411243.

  • Repurposing cryptosporidium inosine 5'-monophosphate dehydrogenase inhibitors as potential antibacterial agents. Mandapati K, Gorla SK, House AL, McKenney ES, Zhang M, Rao SN, Gollapalli DR, Mann BJ, Goldberg JB, Cuny GD, Glomski IJ, Hedstrom L. ACS Med Chem Lett. 2014 Jun 10;5(8):846-50. doi: 10.1021/ml500203p. eCollection 2014 Aug 14.

  • Robust quantification of orientation selectivity and direction selectivity. Mazurek M, Kager M, Van Hooser SD. Front Neural Circuits. 2014 Aug 6;8:92. doi: 10.3389/fncir.2014.00092. eCollection 2014.

  • Post-stress rumination predicts HPA axis responses to repeated acute stress. Gianferante D, Thoma MV, Hanlin L, Chen X, Breines JG, Zoccola PM, Rohleder N. Psychoneuroendocrinology. 2014 Nov;49:244-52. doi: 10.1016/j.psyneuen.2014.07.021. Epub 2014 Aug 1.

  • Neuroscience: What females really want. Griffith LC. Nature. 2014 Aug 14;512(7513):138-9. doi: 10.1038/512138a. No abstract available.

  • Larval Population Density Alters Adult Sleep in Wild-Type Drosophila melanogaster but Not in Amnesiac Mutant Flies. Chi MW, Griffith LC, Vecsey CG. Brain Sci. 2014 Aug 11;4(3):453-70. doi: 10.3390/brainsci4030453.

  • Virtual Barcoding using LATE-PCR and Lights-On/Lights-Off probes: identification of nematode species in a closed-tube reaction. Rice LM, Reis AH Jr, Wangh LJ. Mitochondrial DNA. 2014 Aug 11:1-6.

  • Acute psychosocial stress induces differential short-term changes in catecholamine sensitivity of stimulated inflammatory cytokine production. Strahler J, Rohleder N, Wolf JM. Brain Behav Immun. 2014 Aug 6. pii: S0889-1591(14)00406-1. doi: 10.1016/j.bbi.2014.07.014.

  • Measures of adiposity predict interleukin-6 responses to repeated psychosocial stress. McInnis CM, Thoma MV, Gianferante D, Hanlin L, Chen X, Breines JG, Hong S, Rohleder N. Brain Behav Immun. 2014 Aug 6. pii: S0889-1591(14)00410-3. doi: 10.1016/j.bbi.2014.07.018.

  • Sources of DNA double-strand breaks and models of recombinational DNA repair. Mehta A, Haber JE. Cold Spring Harb Perspect Biol. 2014 Aug 7;6(9):a016428. doi: 10.1101/cshperspect.a016428.

  • Kinetic hairpin oligonucleotide blockers for selective amplification of rare mutations. Jia Y, Sanchez JA, Wangh LJ. Sci Rep. 2014 Aug 1;4:5921. doi: 10.1038/srep05921.

  • Neuron-specific protein interactions of Drosophila CASK-ß are revealed by mass spectrometry. Mukherjee K, Slawson JB, Christmann BL, Griffith LC. Front Mol Neurosci. 2014 Jun 30;7:58. doi: 10.3389/fnmol.2014.00058. eCollection 2014.

  • F-/Cl- selectivity in CLCF-type F-/H+ antiporters. Brammer AE, Stockbridge RB, Miller C. J Gen Physiol. 2014 Aug;144(2):129-36. doi: 10.1085/jgp.201411225.

  • Frequent Interchromosomal Template Switches during Gene Conversion in S. cerevisiae. Tsaponina O, Haber JE. Mol Cell. 2014 Aug 21;55(4):615-25. doi: 10.1016/j.molcel.2014.06.025. Epub 2014 Jul 24.

  • Anger responses to psychosocial stress predict heart rate and cortisol stress responses in men but not women. Lupis SB, Lerman M, Wolf JM. Psychoneuroendocrinology. 2014 Nov;49:84-95. doi: 10.1016/j.psyneuen.2014.07.004. Epub 2014 Jul 14.

  • Pathways for virus assembly around nucleic acids. Perlmutter JD, Perkett MR, Hagan MF. J Mol Biol. 2014 Sep 9;426(18):3148-65. doi: 10.1016/j.jmb.2014.07.004. Epub 2014 Jul 16.

  • Neuromodulation of circuits with variable parameters: single neurons and small circuits reveal principles of state-dependent and robust neuromodulation. Marder E, O'Leary T, Shruti S. Annu Rev Neurosci. 2014;37:329-46. doi: 10.1146/annurev-neuro-071013-013958.

  • Neurobiology: Keeping a lid on it. Turrigiano G. Nature. 2014 Jul 17;511(7509):297-8. doi: 10.1038/nature13641. Epub 2014 Jul 9. No abstract available.

  • At the interface of sensory and motor dysfunctions and Alzheimer's disease. Albers MW, Gilmore GC, Kaye J, Murphy C, Wingfield A, Bennett DA, Boxer AL, Buchman AS, Cruickshanks KJ, Devanand DP, Duffy CJ, Gall CM, Gates GA, Granholm AC, Hensch T, Holtzer R, Hyman BT, Lin FR, McKee AC, Morris JC, Petersen RC, Silbert LC, Struble RG, Trojanowski JQ, Verghese J, Wilson DA, Xu S, Zhang LI. Alzheimers Dement. 2014 Jul 8. pii: S1552-5260(14)00642-6. doi: 10.1016/j.jalz.2014.04.514. Review.

  • Effect of chromosome tethering on nuclear organization in yeast. Avsaroglu B, Bronk G, Gordon-Messer S, Ham J, Bressan DA, Haber JE, Kondev J. PLoS One. 2014 Jul 14;9(7):e102474. doi: 10.1371/journal.pone.0102474. eCollection 2014.

  • Quantitative analysis of triple-mutant genetic interactions. Braberg H, Alexander R, Shales M, Xu J, Franks-Skiba KE, Wu Q, Haber JE, Krogan NJ. Nat Protoc. 2014 Aug;9(8):1867-81. doi: 10.1038/nprot.2014.127. Epub 2014 Jul 10.

  • Automatic parameter estimation of multicompartmental neuron models via minimization of trace error with control adjustment. Brookings T, Goeritz ML, Marder E. J Neurophysiol. 2014 Jul 9:jn.00007.2014. doi: 10.1152/jn.00007.2014.

  • Local field potentials in the gustatory cortex carry taste information. Pavão R, Piette CE, Lopes-dos-Santos V, Katz DB, Tort AB. J Neurosci. 2014 Jun 25;34(26):8778-87. doi: 10.1523/JNEUROSCI.0908-14.2014.

  • An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases. Boucher JI, Jacobowitz JR, Beckett BC, Classen S, Theobald DL. Elife. 2014 Jun 25;3. doi: 10.7554/eLife.02304.

  • Dynamics of self-propelled particles under strong confinement. Fily Y, Baskaran A, Hagan MF. Soft Matter. 2014 Aug 14;10(30):5609-17. doi: 10.1039/c4sm00975d.

  • Motion sickness: more than nausea and vomiting. Lackner JR. Exp Brain Res. 2014 Aug;232(8):2493-510. doi: 10.1007/s00221-014-4008-8. Epub 2014 Jun 25.

  • Violations of newly-learned predictions elicit two distinct P3 components. Noyce A, Sekuler R. Front Hum Neurosci. 2014 Jun 10;8:374. doi: 10.3389/fnhum.2014.00374. eCollection 2014.

  • PDF neuron firing phase-shifts key circadian activity neurons in Drosophila. Guo F, Cerullo I, Chen X, Rosbash M. Elife. 2014 Jun 17;3. doi: 10.7554/eLife.02780.

  • Molecular mechanisms of activity-dependent changes in dendritic morphology: role of RGK proteins. Ghiretti AE, Paradis S. Trends Neurosci. 2014 Jul;37(7):399-407. doi: 10.1016/j.tins.2014.05.003. Epub 2014 Jun 5. Review.

  • Source Memory for Self and Other in Patients With Mild Cognitive Impairment due to Alzheimer's Disease. Rosa NM, Deason RG, Budson AE, Gutchess AH. J Gerontol B Psychol Sci Soc Sci. 2014 Jun 5. pii: gbu062.

  • It takes two to tangle: Prp24 and spliceosome assembly. Pomeranz Krummel DA, MacMillan AM. Nat Struct Mol Biol. 2014 Jun;21(6):503-4. doi: 10.1038/nsmb.2838.
 

* Partial list of publications June-November 2014

 
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